Hi there,
the Site you have imported uses a Header Element for merging the content with the Site Header, so change back so your Navigation and Logo is visible. Then go to Dashboard > Appearance > Elements. You will see a Header Element:
https://docs.generatepress.com/article/header-element-overview/
On the Site Header Tab within the element you will see Navigation Colors.
These are overriding the Customzier colors to provide the merged effect.
You can either edit the colors there so they are visible if you want to keep the overlay effect or you can simply delete the Header Element and then all the navigation styling will be controlled by the Customizer.